PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540062.1_FGP003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 638aa    MW: 74310.1 Da    PI: 9.0012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540062.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-08619636926
                        GGGTS--TTTTT-SS-SS CS
            zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                        +++ G+C+yG++CkF H+
  KN540062.1_FGP003 619 YQQQGWCPYGENCKFVHD 636
                        8999*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.305.1E-765108IPR003034SAP domain
SuperFamilySSF689064.4E-666108No hitNo description
PfamPF020372.2E-773107IPR003034SAP domain
PROSITE profilePS508008.58873107IPR003034SAP domain
Gene3DG3DSA:4.10.1000.109.4E-7608636IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267610638IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-6612637IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038612637IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-6619636IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAAAAAAADD DDHRTALPRE EDDGEEEEEV ESDDEEEEEG EGDGWKGSRM PKMGKDEMDL  60
LAMVDKLMHD GQLEKLKVYE CKAYLRMHKL RLSGNKEVLL TRIREHIEYE LYPLCNLSFF  120
FICYLSTLLI FCNANELLLF DHFLVLQNQG ENYGRGDSCK GDVVVFEQNI YKRKKGAPRG  180
VKGHLCGQRT NAGRIIKESY GTKKQQHTFT PWLDEEERNR ALQEKHARGY VARKTREVRI  240
KEKDNERMRR LNRNKENKSK GQDSMNKKSS QEVLPQHTVT TNTVQKRAEK IIPSLQHGES  300
GNSSQQHLSS KQTPTEQLLH YLPQFPHPQQ HNEVLLQKGT SRTSTAQLTN HQAPSLQHAV  360
KAETTQQQQQ LPKSIKPAPI QQSSAYPQQY PKNQHHNQEL PRVPPSQEQR AAVSQTSAAR  420
QDFTNHKAPP SRQHGGSENM RRQEISSRPT LTPTPQQAVS YTQQQPPNHQ YRNEAFRQQG  480
GTSTSGTGFM DRQSNNWGST DHDKPAFQPR MTFTQKAKTY QHGSNGSGHH QARIDRETHQ  540
PLRSRNQDYY WEDQSYHHQQ NHHQNYYYGH RQMSQDQYHH QQNHHQNYNG RQGMNRNQYH  600
DRQNQNPQRF RPWKPCFIYQ QQGWCPYGEN CKFVHDLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799360.0AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAC0917340.0AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613634.10.0PREDICTED: zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLB8BGM90.0B8BGM9_ORYSI; Uncharacterized protein
STRINGBGIOSGA032003-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os10g25220.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022